Data acquisition and analysis software Bioinformatics

for mass spectrometry

ProteinScape is Bruker's central bioinformatics software combining storage, organization, and processing of proteomic data sets. Utilizing well-established protein and peptide analysis functionalities, it provides a sophisticated tool for further evaluation of glycomics data. The specific features for glycan analysis include the following: GlycoQuest—the first fully-integrated search engine for glycan database searches Classification for the identification and selection of glycopeptide spectra within an LC-MS/MS dataset Determination of glycopeptides and glycan mass for subsequent GlycoQuest search GlycomeDB and additional databases used as default. Support of customized databases Annotation of MS/MS spectra with glycan fragment structures State-of-the-art and flexible reporting